Home

quick Clonal Analysis Toolkit—quiCAT—is a toolkit for extracting, and analyzing clonal populations from sequencing data. Designed for flexibility and performance, it simplifies the process genetic barcodes extraction from bulkDNA, single-cell, and spatial transcriptomics datasets.

Key Features¶

Flexible Input Formats: Supports FASTQ and BAM file formats, and a wide array of sequencing technologies.
Optimized for Speed: ngrams based barcodes collapsing to speed up the extraction.

Description — Overview of quiCAT workflow.

Getting Started¶

Refer to the Installation guide to install quiCAT

Refer to the Usage Principles, for an introduction on how to use quiCAT modules.

Contributing¶

Contributions are welcome! If you would like to contribute to quiCAT, please read the contributing guidelines.

License¶

quiCAT is licensed under the MIT License.

For more information, visit the GitHub repository.